- Cancer Research Institute
- Nano Life Science Institute (WPI-NanoLSI)
- Nanomaterials Research Institute
- Advanced Manufacturing Technology Institute
- Advanced Mobility Research Institute
- Institute for the Study of Ancient Civilizations and Cultural Resources
- Institute of Nature and Environmental Technology
- Research Center for Experimental Modeling of Human Disease
- Research center for child mental development
- Advanced Preventive Medical Sciences Research Center
- Institute for Frontier Science Initiative
- Advanced Research Center for Space Science and Technology